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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "HaploDiploidEquilibrium" in publications use:'
type: software
license: GPL-3.0-only
title: 'HaploDiploidEquilibrium: Calculate F Statistics Using Mixed Haploid and Diploid
  Organism Data'
version: 0.1.0
doi: 10.32614/CRAN.package.HaploDiploidEquilibrium
abstract: Provides functions to estimate population genetics summary statistics from
  haplo-diploid systems, where one sex is haploid and the other diploid (e.g. Hymenoptera
  insects). It implements a theoretical model assuming equal sex ratio, random mating,
  no selection, no mutation, and no gene flow, deriving expected genotype frequencies
  for both sexes under these equilibrium conditions. The package includes windowed
  calculations (operating over genomic sliding windows from VCF input) for allele
  and genotype frequencies, the inbreeding coefficient (Fis), pairwise Fst, Nei's
  H (gene diversity), Watterson's Theta, and sex-specific reference allele frequencies.
  Most statistics are agnostic to ploidy, allowing the package to be applied to both
  strictly haplo-diploid and fully diploid systems.
authors:
- family-names: Sousa
  given-names: Paulo
  email: sousapaulo16@gmail.com
- family-names: Pina-Martins
  given-names: Francisco
  email: f.pinamartins@gmail.com
repository: https://stuntspt.r-universe.dev
commit: a16ed4e9d9f463d62cbacfa4832fab0492d44bed
date-released: '2026-02-25'
contact:
- family-names: Pina-Martins
  given-names: Francisco
  email: f.pinamartins@gmail.com